PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G240900.1
Common NameB456_007G240900
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARR-B
Protein Properties Length: 219aa    MW: 24926 Da    PI: 7.8236
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G240900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like24.18.2e-08158181327
             G2-like   3 rlrWtpeLHerFveaveqLGGsekA 27 
                          ++W+ eLH++Fv av+qL G++ +
  Gorai.007G240900.1 158 WVVWSVELHQQFVPAVNQL-GIDST 181
                         579****************.77654 PP

2Response_reg53.11.8e-18281281109
                         EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS
        Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 
                         vl+vdD+p+ ++ l+++l++  y +v+ +   + al +l+e++  +D+i  D+ mp+mdG++ll++i     +lpii v ++g        
  Gorai.007G240900.1  28 VLVVDDDPTCLRFLEKMLRNCSY-DVTKCNRVKTALSKLRENRngFDIITSDVYMPDMDGFKLLEHIGLDI-DLPIIKVVMKG-------- 108
                         89*********************.***************99999***********************6655.68888777544........ PP

                         HHTTESEEEESS--HHHHHH CS
        Response_reg  90 lkaGakdflsKpfdpeelvk 109
                         ++ Ga d+l Kp+ +e+l +
  Gorai.007G240900.1 109 VRHGACDYLIKPVRIEALKN 128
                         68888888888888888865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521725.41E-2824131IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23006.1E-3025148No hitNo description
SMARTSM004481.7E-1826130IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011026.70227134IPR001789Signal transduction response regulator, receiver domain
PfamPF000727.8E-1628128IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.13E-2029131No hitNo description
Gene3DG3DSA:1.10.10.603.5E-6156181IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0005622Cellular Componentintracellular
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MSTASLLTTW KVRDVVPVPD QFPTSLRVLV VDDDPTCLRF LEKMLRNCSY DVTKCNRVKT  60
ALSKLRENRN GFDIITSDVY MPDMDGFKLL EHIGLDIDLP IIKVVMKGVR HGACDYLIKP  120
VRIEALKNIW KLEKLEKRKD NKDESEDKDD TSTLKTPWVV WSVELHQQFV PAVNQLGIDS  180
TILLPKYVGL AHEDAREHLK SFLLICASFS QKGCNIPK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5879308e-46JX587930.1 Gossypium hirsutum clone NBRI_GE22201 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012453255.12e-88PREDICTED: two-component response regulator ARR2
SwissprotQ9ZWJ93e-70ARR2_ARATH; Two-component response regulator ARR2
TrEMBLA0A0D2PE941e-160A0A0D2PE94_G
STRINGVIT_05s0077g01480.t011e-76(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24032773
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-55response regulator 2
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]